Was held on Tuesday, March 22, 2016, 8:30 a.m.- 2:30 p.m
Download the agenda
This all-day workshop provides an overview of the genomic capabilities available to JGI users through the genomic technologies group. In the morning session, we will focus on capabilities in genome sequencing, genome variation analysis, RNA sequencing and epigenomics. A lunchtime break-out session will focus on sample management and logistics of approved JGI projects. In the first afternoon session, we will cover metabolomics and gene functional genomics. The concluding session will cover DNA synthesis and genome engineering capabilities. Each talk will provide an overview of the experimental and computational approaches employed, followed by an illustrative case study from a recent sequencing project. We intend for this to be a highly interactive session, and welcome comments and questions about existing technologies, as well as suggestions of new technologies that JGI should explore in the future. This workshop will also provide an overview of the current metabolomics capabilities at JGI that can be included in CSPs. We will introduce the vision for metabolomics at JGI and describe current research projects integrating metabolomics with DNA sequencing and with DNA synthesis technologies. We aim for this to be an informative and highly interactive session such that attendees will leave with an understanding of how metabolomics can complement their genomics research.
Download Presentations:
- Sequencing Technologies: Overview & Capabilities
- Oxford Nanopore Sequencing
- Genome Assembly
- Resequencing
- Metagenomics
- RNA-Seq
- Singe-Cell Genomics Pipeline
- Metabolomic Technologies
- Linking Sequence to Metabolic Function–Informatics
- Linking Sequence to Metabolic Function–Case Studies
- DNA synthesis Platform and Applications
- Synthetic Biology – DNA Synthesis Program
- Design Tools for Synthetic Biology
Host: Matt Blow
Admin Contact: Margie Lozano